what size brakes are you running? this will ultimately give the answer...
in my car:
FC3S Conversion Front
RT142 Disc Conversion Rear
With No Booster i will be running a 15/16th, with a booster i would run a 1inch...
remeber when you remove your booster ( as you will when using a floor mounted pedal box ) you need to go with a smaller master cylinder bore than if you still had the booster...
EDIT: Spelling