2 types of extension housings on the Kx0 boxes.
Short one suits the older corollas (< KE70)
Longer one for the KE70.
Can be swapped between gear boxes. As your 5 speed is shorter, its a 5 speed from an earlier model, and the person who did it didn't swap to the longer rear extension housing. Thus, you have the shifter closer to the dash.
Easy way to go to the factory KE70 location is to either swap whole gearbox for another one that suits a KE70, or just find a long extension housing from an old k40 or k50 and put it on yours.